[Bioc-devel] Rhtslib 1.5.3 fails on install

[Hervé Pagès]

Hi Johannes,

On 07/12/2016 09:06 AM, Johannes Helmuth wrote:
> Dear Bioconductor Developers,
>
> I use `Rhtslib` in two Bioconductor packages, namely `bamsignals` and
> `normr`. Apparently, the development version of `Rhtslib` (version
> 1.5.3) fails on install because automake is not available on the
> Bioconductor build system (see
> http://bioconductor.org/checkResults/devel/bioc-LATEST/Rhtslib/zin1-install.html):
>
>
>  > /home/biocbuild/bbs-3.4-bioc/meat/Rhtslib/src/htslib/missing: line
> 81: automake-1.14: command not found WARNING: 'automake-1.14' is missing
> on your system.
>
> Can this be fixed in the near future, s.t. my packages are built again?

We committed a fix for this. Thanks to Martin for the fix. It's in
Rhtslib 1.5.4, which will become available on Friday.

Cheers,
H.

>
> Thank you very much,
> Johannes Helmuth
>
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-- 
Hervé Pagès

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