[Bioc-devel] normr 0.99.5 Test Coverage "unknown"
Kasper Daniel Hansen
kasperdanielhansen at gmail.com
Tue Jul 12 18:33:06 CEST 2016
obviously "cannot do the coverage report"
On Tue, Jul 12, 2016 at 12:32 PM, Kasper Daniel Hansen <
kasperdanielhansen at gmail.com> wrote:
> Without knowing the details it seems self-evident to me that the build
> system can do the coverage report if the package doesn't build.
> On Tue, Jul 12, 2016 at 12:29 PM, Johannes Helmuth <helmuth at molgen.mpg.de>
>> Dear Bioconductor Developers,
>> I recently contributed a package `normR` for calling enrichment and
>> differences in ChIP-seq data (http://bioconductor.org/packages/normr/).
>> To test the functionality of the package, I used `testthat`. All the tests
>> run well when using `testthat::test()`, `R CMD build` or `R CMD check`.
>> However, the `normr` package landing package (
>> http://bioconductor.org/packages/normr/) reports "Test coverage:
>> I installed `covr` on my local machine and ran
>> `covr::package_coverage()`. It seems to work fine:
>> > normr Coverage: 77.50%
>> > R/NormRCountConfig.R: 50.00%
>> > R/methods.R: 64.32%
>> > src/em.cpp: 79.27%
>> > R/NormRFit.R: 87.33%
>> > src/normr_init.c: 100.00%
>> Is "Test Coverage: unknown" related to the Bioconductor build system not
>> being able to build my package on Linux? (I filed this in an earlier post
>> related to the unavailability of automake-1.14 for Rhtslib 1.5.3
>> Thank you very much,
>> Johannes Helmuth
>> Bioc-devel at r-project.org mailing list
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