[Bioc-devel] build error only occurs in window system

Ou, Jianhong Jianhong.Ou at umassmed.edu
Thu Jul 7 20:05:22 CEST 2016

Hi Julie,

You could try to install windows 10 in a virtualBox for debugging.

virtualBox: https://www.virtualbox.org/wiki/Downloads

Windows 10: https://www.microsoft.com/en-us/software-download/windows10/

Yours Sincerely,

Jianhong Ou

TEL: 508-856-5379
LRB 608
Bioinformatician of Bioinformatics core at
Department of Molecular, Cell and Cancer Biology
UMASS Medical School
364 Plantation Street Worcester,
MA 01605

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On 7/7/16 1:15 PM, "Bioc-devel on behalf of Zhu, Lihua (Julie)"
<bioc-devel-bounces at r-project.org on behalf of Julie.Zhu at umassmed.edu>

>I recently noticed that GUIDEseq page has a error build status at
>http://bioconductor.org/packages/release/bioc/html/GUIDEseq.html. Oddly,
>the error only occurs in the window server.
>Is this something related to the window server solvable by the core team,
>or should I change something to make it work? I am preparing a
>manuscript. It would  not look good if the reviewers see a red error
>status on the page.
>Could you please help me? Many thanks!
>Best regards,
> running command 
>e" --quiet --pdf "GUIDEseq.tex" --max-iterations=20 -I
>"E:/biocbld/bbs-3.3-bioc/R/share/texmf/tex/latex" -I
>"E:/biocbld/bbs-3.3-bioc/R/share/texmf/bibtex/bst"' had status 1
>Error in find_vignette_product(name, by = "texi2pdf", engine = engine) :
>  Failed to locate the 'texi2pdf' output file (by engine 'utils::Sweave')
>for vignette with name 'GUIDEseq'. The following files exist in directory
>'.': 'GUIDEseq-concordance.tex', 'GUIDEseq.Rnw', 'GUIDEseq.tex',
>'gRNA-PlusMinusPeaksMerged.bed', 'gRNA-PlusMinusPeaksMerged.xls',
>'gRNA-peaks.xls', 'gRNAHEK293_site4_chr13.bamReadSummary.xls',
>'mergedPeaks.bed', 'offTargetsInPeakRegions.xls'
>Calls: <Anonymous> -> find_vignette_product
>Execution halted
>Confidentiality Notice:\ This e-mail message, including ...{{dropped:11}}

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