[Bioc-devel] build error only occurs in window system

Zhu, Lihua (Julie) Julie.Zhu at umassmed.edu
Thu Jul 7 19:15:12 CEST 2016


I recently noticed that GUIDEseq page has a error build status at
http://bioconductor.org/packages/release/bioc/html/GUIDEseq.html. Oddly, the error only occurs in the window server.

Is this something related to the window server solvable by the core team, or should I change something to make it work? I am preparing a manuscript. It would  not look good if the reviewers see a red error status on the page.

Could you please help me? Many thanks!

Best regards,


 running command '"C:\Users\BIOCBU˜1\AppData\Local\Programs\MIKTEX˜1.9\miktex\bin\texify.exe" --quiet --pdf "GUIDEseq.tex" --max-iterations=20 -I "E:/biocbld/bbs-3.3-bioc/R/share/texmf/tex/latex" -I "E:/biocbld/bbs-3.3-bioc/R/share/texmf/bibtex/bst"' had status 1
Error in find_vignette_product(name, by = "texi2pdf", engine = engine) :
  Failed to locate the 'texi2pdf' output file (by engine 'utils::Sweave') for vignette with name 'GUIDEseq'. The following files exist in directory '.': 'GUIDEseq-concordance.tex', 'GUIDEseq.Rnw', 'GUIDEseq.tex', 'gRNA-PlusMinusPeaksMerged.bed', 'gRNA-PlusMinusPeaksMerged.xls', 'gRNA-peaks.xls', 'gRNAHEK293_site4_chr13.bamReadSummary.xls', 'mergedPeaks.bed', 'offTargetsInPeakRegions.xls'
Calls: <Anonymous> -> find_vignette_product
Execution halted
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