[Bioc-devel] IRanges - PartitioningByEnd not found when package method runs.

Michael Lawrence lawrence.michael at gene.com
Fri Jan 15 01:09:03 CET 2016


Thanks for the correction. I was starting to think my memory was
deteriorating, because I couldn't remember fixing that ;)

On Thu, Jan 14, 2016 at 3:43 PM, Hervé Pagès <hpages at fredhutch.org> wrote:
> On 01/13/2016 07:28 PM, Hervé Pagès wrote:
>>
>> Hi Ben, Martin,
>>
>> On 01/13/2016 08:19 AM, Morgan, Martin wrote:
>
> [...]
>>>
>>> So this is a bug in S4Vectors, but fixed in Bioc-devel where new
>>> package development should be occurring.
>>>
>>> I'll leave it to Herve or others to decide whether S4Vectors in
>>> release should be patched.
>>
>>
>> Michael fixed this in devel. Thanks Michael!
>
>
> I was told off-list that Jim Hester fixed this in devel. True:
>
> pages at latitude:~/svn/bioconductor/Rpacks/S4Vectors$ svn log -r 109840
> ------------------------------------------------------------------------
> r109840 | j.hester | 2015-10-22 09:56:54 -0700 (Thu, 22 Oct 2015) | 2 lines
>
> Use fully qualified names for IRanges::PartitioningByEnd
>
> ------------------------------------------------------------------------
>
> Sorry for that. You've got to give the right credit to the right
> people. So thanks Jim! But also thanks Michael for many other fixes
> to S4Vectors!
>
> H.
>
>
> --
> Hervé Pagès
>
> Program in Computational Biology
> Division of Public Health Sciences
> Fred Hutchinson Cancer Research Center
> 1100 Fairview Ave. N, M1-B514
> P.O. Box 19024
> Seattle, WA 98109-1024
>
> E-mail: hpages at fredhutch.org
> Phone:  (206) 667-5791
> Fax:    (206) 667-1319
>
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