[Bioc-devel] biconductor build error and warning

[Dwivedi, Bhakti]

Hi,

What's the expected time-frame for the Bioconductor package review?

Thank you.

Regards,
Bhakti

From: Dwivedi, Bhakti
Sent: Sunday, December 04, 2016 7:38 PM
To: Dan Tenenbaum <dtenenba at fredhutch.org>
Cc: bioc-devel <bioc-devel at r-project.org>
Subject: Re: [Bioc-devel] biconductor build error and warning


Thank you so much Dan!!

________________________________
From: Dan Tenenbaum <dtenenba at fredhutch.org<mailto:dtenenba at fredhutch.org>>
Sent: Sunday, December 4, 2016 1:41:59 PM
To: Dwivedi, Bhakti
Cc: bioc-devel
Subject: Re: [Bioc-devel] biconductor build error and warning



----- Original Message -----
> From: "Bhakti Dwivedi" <bhakti.dwivedi at emory.edu<mailto:bhakti.dwivedi at emory.edu>>
> To: "bioc-devel" <bioc-devel at r-project.org<mailto:bioc-devel at r-project.org>>
> Sent: Sunday, December 4, 2016 6:29:22 AM
> Subject: [Bioc-devel] biconductor build error and warning

> Could anyone please help me with the below two bioconductor build error and
> warnings?
>
>
> I am getting the below ERROR Bioconductor build msg on Mac OS X
> (https://github.com/Bioconductor/Contributions/issues/202)
>
>
> installing the package to build vignettes
> ERROR: dependency HH is not available for package GISPA
>
>

This is because HH depends on Rmpfr which has some system dependencies that are not yet installed on that machine; I'm sure a member of the Bioconductor team will get to this soon.


> removing
> /private/var/folders/_l/1jpyvgt17qzgj1yz7f0z4np80000gr/T/Rtmp939MXS/Rinst16ad7608b810a/GISPA
> ERROR: package installation failed
>
>
> I do not get this ERROR messages when I build, check or install on my Mac OS X.
>
>
> Additionally, I am getting the below warning message:
>
>
> WARNING: Update R version dependency from 3.3.2 to 3.4.
>


This is because your DESCRIPTION file says

Depends: R (>= 3.3.2)

But since you are submitting to the devel branch of Bioconductor, which will only work with R-3.4, you should update this to

Depends: R (>= 3.4)

Dan


>
> Appreciate your help and any suggestions to fix them.
>
>
> Thank you.
>
>
> ________________________________
>
> This e-mail message (including any attachments) is for...{{dropped:22}}