[Bioc-devel] biconductor build error and warning

[Dwivedi, Bhakti]

This helps, Thank you so much!

________________________________
From: Hervé Pagès <hpages at fredhutch.org>
Sent: Monday, December 5, 2016 9:16:15 PM
To: Dwivedi, Bhakti
Cc: bioc-devel
Subject: Re: [Bioc-devel] biconductor build error and warning

Hi Bhakti,

Please see my post from October here

   https://stat.ethz.ch/pipermail/bioc-devel/2016-October/009997.html

for why Rmpfr (and thus HH) fails to install on oaxaca.

We're still hoping that the CRAN folks will start providing Mac
binary packages for r-devel soon.

In the meantime please ignore that error on oaxaca.

Cheers,
H.


On 12/04/2016 04:37 PM, Dwivedi, Bhakti wrote:
> Thank you so much Dan!!
>
> ________________________________
> From: Dan Tenenbaum <dtenenba at fredhutch.org>
> Sent: Sunday, December 4, 2016 1:41:59 PM
> To: Dwivedi, Bhakti
> Cc: bioc-devel
> Subject: Re: [Bioc-devel] biconductor build error and warning
>
>
>
> ----- Original Message -----
>> From: "Bhakti Dwivedi" <bhakti.dwivedi at emory.edu>
>> To: "bioc-devel" <bioc-devel at r-project.org>
>> Sent: Sunday, December 4, 2016 6:29:22 AM
>> Subject: [Bioc-devel] biconductor build error and warning
>
>> Could anyone please help me with the below two bioconductor build error and
>> warnings?
>>
>>
>> I am getting the below ERROR Bioconductor build msg on Mac OS X
>> (https://github.com/Bioconductor/Contributions/issues/202)
>>
>>
>> installing the package to build vignettes
>> ERROR: dependency HH is not available for package GISPA
>>
>>
>
> This is because HH depends on Rmpfr which has some system dependencies that are not yet installed on that machine; I'm sure a member of the Bioconductor team will get to this soon.
>
>
>> removing
>> /private/var/folders/_l/1jpyvgt17qzgj1yz7f0z4np80000gr/T/Rtmp939MXS/Rinst16ad7608b810a/GISPA
>> ERROR: package installation failed
>>
>>
>> I do not get this ERROR messages when I build, check or install on my Mac OS X.
>>
>>
>> Additionally, I am getting the below warning message:
>>
>>
>> WARNING: Update R version dependency from 3.3.2 to 3.4.
>>
>
>
> This is because your DESCRIPTION file says
>
> Depends: R (>= 3.3.2)
>
> But since you are submitting to the devel branch of Bioconductor, which will only work with R-3.4, you should update this to
>
> Depends: R (>= 3.4)
>
> Dan
>
>
>>
>> Appreciate your help and any suggestions to fix them.
>>
>>
>> Thank you.
>>
>>
>> ________________________________
>>
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>
> _______________________________________________
> Bioc-devel at r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>

--
Hervé Pagès

Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
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P.O. Box 19024
Seattle, WA 98109-1024

E-mail: hpages at fredhutch.org
Phone:  (206) 667-5791
Fax:    (206) 667-1319

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