[Bioc-devel] Dependency update propagation (rcdk on morelia)
dtenenba at fredhutch.org
Mon Dec 5 22:26:58 CET 2016
Actually it looks like the version of java installed on morelia is 1.6. So it appears that 1.7 (or higher) needs to be installed.
----- Original Message -----
> From: "Zach Charlop-Powers" <zach.charlop.powers at gmail.com>
> To: "Nan Xiao" <road2stat at gmail.com>
> Cc: "bioc-devel" <bioc-devel at r-project.org>
> Sent: Monday, December 5, 2016 1:02:52 PM
> Subject: Re: [Bioc-devel] Dependency update propagation (rcdk on morelia)
> Hi Nan,
> rCDK 3.3.6 requires Java8 and will throw error if the Java environment is
> incorrect. BioC Build only has Java7 hence the error. The new version of
> rCDK requires Java7. Once rcdk 3.3.8 makes it onto the BioC builds (its on
> CRAN), these errors should clear up. Please keep me posted if they don't.
> zach cp
> On Mon, Dec 5, 2016 at 3:43 PM, Nan Xiao <road2stat at gmail.com> wrote:
>> Hey guys,
>> - it seems this problem is also affecting the other two Bioc packages
>> depending on rcdk, i.e. RMassBank and rcellminer (release + devel). Any
>> ideas why?
>> On Fri, Dec 2, 2016 at 2:29 PM, Nan Xiao <road2stat at gmail.com> wrote:
>>> Hi Bioc,
>>> - the Rcpi package depends on rcdk, and the rcdk package was updated last
>>> week from 3.3.6 to 3.3.8 on CRAN thanks to Zach's (cc'd) work, which
>>> removed the Java > 1.8 requirement (previously discussed in
>>> https://stat.ethz.ch/pipermail/bioc-devel/2016-October/009881.html ).
>>> I've updated the Rcpi package and specified the rcdk version to be >=
>>> 3.3.8, while the most recent Mac build gives the error: (
>>> Rcpi/morelia-buildsrc.html )
>>> namespace 'rcdk' 3.3.6 is being loaded, but >= 3.3.8 is required.
>>> So it seems morelia is still using rcdk 3.3.6, while this >= 3.3.8
>>> version requirement is fulfilled by Linux and Windows builds (if I
>>> understand correctly).
>>> Is there anything I could do to solve this issue?
>>> Thanks a lot,
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