[Bioc-devel] Dependency update propagation (rcdk on morelia)

[Zach Charlop-Powers]

​Hi Nan,

rCDK 3.3.6 requires Java8 and will throw error if the Java environment is
incorrect.  BioC Build only has Java7 hence the error. The new version of
rCDK requires Java7. Once rcdk 3.3.8 makes it onto the BioC builds (its on
CRAN), these errors should clear up.  Please keep me posted if they don't.

zach cp

On Mon, Dec 5, 2016 at 3:43 PM, Nan Xiao <road2stat at gmail.com> wrote:

> Hey guys,
>
> - it seems this problem is also affecting the other two Bioc packages
> depending on rcdk, i.e. RMassBank and rcellminer (release + devel). Any
> ideas why?
>
> Thanks,
> -Nan
>
> On Fri, Dec 2, 2016 at 2:29 PM, Nan Xiao <road2stat at gmail.com> wrote:
>
>> Hi Bioc,
>>
>> - the Rcpi package depends on rcdk, and the rcdk package was updated last
>> week from 3.3.6 to 3.3.8 on CRAN thanks to Zach's (cc'd) work, which
>> removed the Java > 1.8 requirement (previously discussed in
>> https://stat.ethz.ch/pipermail/bioc-devel/2016-October/009881.html ).
>>
>> I've updated the Rcpi package and specified the rcdk version to be >=
>> 3.3.8, while the most recent Mac build gives the error: (
>> http://bioconductor.org/checkResults/release/bioc-LATEST/
>> Rcpi/morelia-buildsrc.html )
>>
>> namespace 'rcdk' 3.3.6 is being loaded, but >= 3.3.8 is required.
>>
>> So it seems morelia is still using rcdk 3.3.6, while this >= 3.3.8
>> version requirement is fulfilled by Linux and Windows builds (if I
>> understand correctly).
>>
>> Is there anything I could do to solve this issue?
>>
>> Thanks a lot,
>> -Nan
>>
>> --
>> http://nanx.me
>>
>
>
>
> --
> http://nanx.me
>

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