[Bioc-devel] biconductor build error and warning

[Dan Tenenbaum]

----- Original Message -----
> From: "Bhakti Dwivedi" <bhakti.dwivedi at emory.edu>
> To: "bioc-devel" <bioc-devel at r-project.org>
> Sent: Sunday, December 4, 2016 6:29:22 AM
> Subject: [Bioc-devel] biconductor build error and warning

> Could anyone please help me with the below two bioconductor build error and
> warnings?
> 
> 
> I am getting the below ERROR Bioconductor build msg on Mac OS X
> (https://github.com/Bioconductor/Contributions/issues/202)
> 
> 
> installing the package to build vignettes
> ERROR: dependency HH is not available for package GISPA
> 
> 

This is because HH depends on Rmpfr which has some system dependencies that are not yet installed on that machine; I'm sure a member of the Bioconductor team will get to this soon.


> removing
> /private/var/folders/_l/1jpyvgt17qzgj1yz7f0z4np80000gr/T/Rtmp939MXS/Rinst16ad7608b810a/GISPA
> ERROR: package installation failed
> 
> 
> I do not get this ERROR messages when I build, check or install on my Mac OS X.
> 
> 
> Additionally, I am getting the below warning message:
> 
> 
> WARNING: Update R version dependency from 3.3.2 to 3.4.
> 


This is because your DESCRIPTION file says

Depends: R (>= 3.3.2)

But since you are submitting to the devel branch of Bioconductor, which will only work with R-3.4, you should update this to 

Depends: R (>= 3.4)

Dan


> 
> Appreciate your help and any suggestions to fix them.
> 
> 
> Thank you.
> 
> 
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