[Bioc-devel] import except on Window Machine

[Karim Mezhoud]

Dear Julie,
Are you using roxigen2 to edit NAMESPACE file?
Are you using R 3.4?
Thanks

In my case, When I used R 3.3 I get this error:


==> R CMD INSTALL --no-multiarch --with-keep.source bioCancer

* installing to library
‘/Library/Frameworks/R.framework/Versions/3.3/Resources/library’
* installing *source* package ‘bioCancer’ ...
** R
** inst
** preparing package for lazy loading
Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
:
  there is no package called ‘c("dataTableOutput", "renderDataTable")’
ERROR: lazy loading failed for package ‘bioCancer’
* removing
‘/Library/Frameworks/R.framework/Versions/3.3/Resources/library/bioCancer’
* restoring previous
‘/Library/Frameworks/R.framework/Versions/3.3/Resources/library/bioCancer’

Exited with status 1

When I used R 3.4, I get :

unfortunately,

Bioconductor version 3.3 (BiocInstaller 1.21.4), ?biocLite for help
Bioconductor does not yet support R version 3.4.0



On Mon, Apr 11, 2016 at 5:30 PM, Zhu, Lihua (Julie) <Julie.Zhu at umassmed.edu>
wrote:

> Thanks, Dan!
>
> Best,
>
> Julie
>
> On 4/11/16 12:22 PM, "Dan Tenenbaum" <dtenenba at fredhutch.org> wrote:
>
> >The windows machine is still running an older version of R that does not
> >support this NAMESPACE syntax. I will update it this week.
> >Dan
> >
> >
> >----- Original Message -----
> >> From: "Lihua Zhu" <Julie.Zhu at umassmed.edu>
> >> To: "bioc-devel" <bioc-devel at r-project.org>
> >> Cc: "Michael Lawrence" <lawrence.michael at gene.com>
> >> Sent: Monday, April 11, 2016 9:18:31 AM
> >> Subject: [Bioc-devel] import except on Window Machine
> >
> >> Michael,
> >>
> >> For some reason,  adding except clause in import in the NAMESPACE file
> >>gives
> >> error on window server, although it runs fine on Linux and Mac OS X.
> >>
> >>
> https://urldefense.proofpoint.com/v2/url?u=http-3A__bioconductor.org_chec
> >>kResults_devel_bioc-2DLATEST_CRISPRseek_moscato2-2Dbuildsrc.html&d=BQICaQ
> >>&c=WJBj9sUF1mbpVIAf3biu3CPHX4MeRjY_w4DerPlOmhQ&r=3IbW-yoIQpGZOKgd4i2bgmPH
> >>hwHHF5gJMlij5cC5bLU&m=t9rR8WHE_O0PrI0B-0ySt37UGJMdDhnwk0JFoVzS5Cw&s=lEJWy
> >>zN3zY_O2V1X3QmOZcPD25KidcjhIQMAky52xsA&e=
> >>
> >> Here is the line that gives error.
> >> import(S4Vectors, except=c(fold, values))
> >>
> >> Did I miss something? Thank!
> >>
> >> Best regards,
> >>
> >> Julie
> >>
> >>
> >>
> >>      [[alternative HTML version deleted]]
> >>
> >> _______________________________________________
> >> Bioc-devel at r-project.org mailing list
> >>
> >>
> https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailman
> >>_listinfo_bioc-2Ddevel&d=BQICaQ&c=WJBj9sUF1mbpVIAf3biu3CPHX4MeRjY_w4DerPl
> >>OmhQ&r=3IbW-yoIQpGZOKgd4i2bgmPHhwHHF5gJMlij5cC5bLU&m=t9rR8WHE_O0PrI0B-0yS
> >>t37UGJMdDhnwk0JFoVzS5Cw&s=3ZMFBJ4XMwlGXkfXcB5spcBnnzqBDeqk05sf_TSi88g&e=
>
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