[Bioc-devel] rbind'ing for SummarizedExperiment with no rows

Aaron Lun alun at wehi.edu.au
Sat Apr 9 12:56:08 CEST 2016


Dear List, Martin;

It looks like rbind'ing fails when the first argument is a 
SummarizedExperiment with no rows:

library(SummarizedExperiment)
example(SummarizedExperiment, echo=FALSE)
rbind(se, se[0,]) # works okay; returns 'se'.
rbind(se[0,], se) # fails
# Error in rep.int(width, k) : invalid 'times' value

It might be a fairly silly example, but I would have expected it to just 
give back 'se'.

Cheers,

Aaron

Here's my session information:

R version 3.3.0 beta (2016-04-08 r70447)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 14.04.4 LTS

locale:
  [1] LC_CTYPE=en_GB.UTF-8       LC_NUMERIC=C
  [3] LC_TIME=en_GB.UTF-8        LC_COLLATE=en_GB.UTF-8
  [5] LC_MONETARY=en_GB.UTF-8    LC_MESSAGES=en_GB.UTF-8
  [7] LC_PAPER=en_GB.UTF-8       LC_NAME=C
  [9] LC_ADDRESS=C               LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_GB.UTF-8 LC_IDENTIFICATION=C

attached base packages:
[1] stats4    parallel  stats     graphics  grDevices utils     datasets
[8] methods   base

other attached packages:
[1] SummarizedExperiment_1.1.23 Biobase_2.31.3
[3] GenomicRanges_1.23.25       GenomeInfoDb_1.7.6
[5] IRanges_2.5.42              S4Vectors_0.9.46
[7] BiocGenerics_0.17.4

loaded via a namespace (and not attached):
[1] zlibbioc_1.17.1 tools_3.3.0     XVector_0.11.8



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