[Bioc-devel] BiocCheck required import

[Thomas Dybdal Pedersen]

Sure, sorry. Its available on GitHub at thomasp85/FindMyFriends

> Den 03/09/2015 kl. 16.57 skrev Dan Tenenbaum <dtenenba at fredhutch.org>:
> 
> 
> 
> ----- Original Message -----
>> From: "Dan Tenenbaum" <dtenenba at fredhutch.org>
>> To: "Thomas Lin Pedersen" <thomasp85 at gmail.com>
>> Cc: bioc-devel at r-project.org
>> Sent: Thursday, September 3, 2015 7:55:42 AM
>> Subject: Re: [Bioc-devel] BiocCheck required import
>> 
>> What's the name of the package?
> 
> I mean, is the source available somewhere?
> Dan
> 
> 
>> Dan
>> 
>> 
>> ----- Original Message -----
>>> From: "Thomas Lin Pedersen" <thomasp85 at gmail.com>
>>> To: bioc-devel at r-project.org
>>> Sent: Thursday, September 3, 2015 1:03:42 AM
>>> Subject: [Bioc-devel] BiocCheck required import
>>> 
>>> I’m polishing up a package for release and gets this “REQUIRED”
>>> message from BiocCheck that kinds of baffles me:
>>> 
>>>    * REQUIRED: Packages (IRanges, Biostrings) which provide
>>>    reverse,
>>>      reverse (used in trailsToGraph, trailsToGraph) should be
>>>      imported
>>>      in the NAMESPACE file, otherwise packages that import
>>>      FindMyFriends could fail.
>>> 
>>> This is the source code for trailsToGraph:
>>> 
>>> trailsToGraph <- function(trails) {
>>>    trails <- unlist(lapply(trails, function(x) c(x, NA)))
>>>    edges <- data.frame(from = trails[-length(trails)], to =
>>>    trails[-1])
>>>    edges <- edges[!is.na(edges$from) & !is.na(edges$to),]
>>>    edges <- edges %>%
>>>        group_by(from, to) %>%
>>>        summarise(weight = length(from))
>>>    graph_from_data_frame(edges)
>>> }
>>> 
>>> I do not use reverse() anywhere in my code. Is this a bug in
>>> BiocCheck or are there some requirements for imports with packages
>>> that shares symbols, even though these symbols are not used?
>>> 
>>> best
>>> 
>>> Thomas
>>>    [[alternative HTML version deleted]]
>>> 
>>> _______________________________________________
>>> Bioc-devel at r-project.org mailing list
>>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>> 
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