[Bioc-devel] BiocCheck required import

[Dan Tenenbaum]

----- Original Message -----
> From: "Dan Tenenbaum" <dtenenba at fredhutch.org>
> To: "Thomas Lin Pedersen" <thomasp85 at gmail.com>
> Cc: bioc-devel at r-project.org
> Sent: Thursday, September 3, 2015 7:55:42 AM
> Subject: Re: [Bioc-devel] BiocCheck required import
> 
> What's the name of the package?

I mean, is the source available somewhere?
Dan


> Dan
> 
> 
> ----- Original Message -----
> > From: "Thomas Lin Pedersen" <thomasp85 at gmail.com>
> > To: bioc-devel at r-project.org
> > Sent: Thursday, September 3, 2015 1:03:42 AM
> > Subject: [Bioc-devel] BiocCheck required import
> > 
> > I’m polishing up a package for release and gets this “REQUIRED”
> > message from BiocCheck that kinds of baffles me:
> > 
> >     * REQUIRED: Packages (IRanges, Biostrings) which provide
> >     reverse,
> >       reverse (used in trailsToGraph, trailsToGraph) should be
> >       imported
> >       in the NAMESPACE file, otherwise packages that import
> >       FindMyFriends could fail.
> > 
> > This is the source code for trailsToGraph:
> > 
> > trailsToGraph <- function(trails) {
> >     trails <- unlist(lapply(trails, function(x) c(x, NA)))
> >     edges <- data.frame(from = trails[-length(trails)], to =
> >     trails[-1])
> >     edges <- edges[!is.na(edges$from) & !is.na(edges$to),]
> >     edges <- edges %>%
> >         group_by(from, to) %>%
> >         summarise(weight = length(from))
> >     graph_from_data_frame(edges)
> > }
> > 
> > I do not use reverse() anywhere in my code. Is this a bug in
> > BiocCheck or are there some requirements for imports with packages
> > that shares symbols, even though these symbols are not used?
> > 
> > best
> > 
> > Thomas
> > 	[[alternative HTML version deleted]]
> > 
> > _______________________________________________
> > Bioc-devel at r-project.org mailing list
> > https://stat.ethz.ch/mailman/listinfo/bioc-devel
> > 
> 
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