[Bioc-devel] Feature Request--add host and port to makeTxDbPackageFromBiomart

[Marc Carlson]

This is done BTW.

  Marc

On 02/27/2015 02:43 PM, Marc Carlson wrote:
> Hi Sean,
>
> This seems like a solid suggestion.  I have put it into my queue.
>
>  Marc
>
>
>
> On 02/27/2015 04:41 AM, Sean Davis wrote:
>> Hi, Marc.
>>
>> Since Ensembl has switched to GRCh38 for their most recent builds, to 
>> get
>> access to GRCh37 data now requires a different host and port for 
>> biomaRt.
>> These are exposed in the makeTxDbFromBiomart, but not the accompanying
>> functionality to directly make a package.  Would it make sense to add 
>> host
>> and port as arguments for the latter?
>>
>> Thanks,
>> Sean
>>
>>     [[alternative HTML version deleted]]
>>
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