[Bioc-devel] No vignette contents page/fig refs with Devtools build

Andrzej Oleś andrzej.oles at gmail.com
Mon Mar 16 17:44:46 CET 2015

Dear Steven,

thank you for your inquiry. It would be helpful if you could provide more
details regarding your issue. In particular, a minimal example reproducing
the problem would be a great starting point.


On Mon, Mar 16, 2015 at 4:54 PM, Steven Barrett <Steven.J.Barrett at gsk.com>

> Hello,
> I have a problem with the automated vignette construction during a
> devtools build.
> The vignette is encoded in an .rnw file and I'm using Knitr.
> When I compile the .rnw in RStudio it yields a .pdf with the contents page
> and figure label references properly instantiated.
> However, when I include the .rnw in the package I'm building via devtools
> build the .pdf vignette is produced without the contents page and figure
> label references properly instantiated.
> The package builds fine otherwise and there are no problems reported by
> devtools check or  Biocheck.
> I would be most grateful for any suggestions as to what might be the issue.
> Thanks,
> Steven
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