[Bioc-devel] chromosome lengths (seqinfo) for supported BSgenome builds into GenomeInfoDb?

Hervé Pagès hpages at fredhutch.org
Fri Jun 5 22:45:51 CEST 2015


On 06/05/2015 01:41 PM, Gabe Becker wrote:
>
>
> On Fri, Jun 5, 2015 at 1:39 PM, Tim Triche, Jr. <tim.triche at gmail.com
> <mailto:tim.triche at gmail.com>> wrote:
>
>     how about just
>
>     gr <- addSeqinfo(gr, "hg19")
>
>
> Add sounds like it's, well, adding rather than replacing (Which it
> sometimes would do.
>
> gr <- fixSeqInfo(gr, "hg19")

As I tried to explain earlier, it's not broken.

Come on, we've already a list of 7 proposals! I was hoping you guys
would help pick up one instead of growing the list :-b

H.

>
> instead?
>
> ~G
>
>
> --
> Gabriel Becker, Ph.D
> Computational Biologist
> Genentech Research

-- 
Hervé Pagès

Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
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