[Bioc-devel] BiocCheck examples error when using imported package functions

[Glyn Bradley]

Hi

Please disregard this thread, I've realised it's an error with our code

Thanks
Glyn




From: Glyn Bradley
Sent: 16 January 2015 15:32
To: 'bioc-devel at r-project.org'
Subject: BiocCheck examples error when using imported package functions

Hi,

Our package uses igraph.
We have
imports: igraph in the DESCRIPTION file and
import(igraph)in the NAMESPACE
But when we try to write examples for our functions that use igraph functions to create then use igraph objects from our input, BiocCheck fails on them.
How can we use igraph in our examples?

The error is
> ### ** Examples
>
> network <- graph.formula( "node0" -+ "node1")
> network <- set.edge.attribute(network,"Weight", 1, 1)
> network <- set.vertex.attribute(network,"ID", 1:2, 1:2)
> predictions <- MakePredictions("node0", +1, network, 2)
Error in if (network$isCCG) { : argument is of length zero
Calls: MakePredictions
Execution halted
** running examples for arch 'x64' ... ERROR

Thanks,
Glyn





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