[Bioc-devel] Fwd: readGAlignmentsFromBam function

[Michael Lawrence]

---------- Forwarded message ----------
From: "Karolis Uziela" <karolis.uziela at scilifelab.se>
Date: Feb 19, 2015 9:22 AM
Subject: readGAlignmentsFromBam function
To: "Michael Lawrence" <lawrence.michael at gene.com>
Cc: "bioconductor at r-project.org" <bioconductor at r-project.org>

Hi,

I have looked at R check results for the devel version of Bioconductor and
I noticed that the package I developed ("prebs") gives this warning:

Warning: 'readGAlignmentsFromBam' is deprecated.

What is the new function that should be used instead of
readGAlignmentsFromBam (GenomicAlignments package)? Do the changes
affect readGAlignmentPairs function, too?

Regards,
Karolis

-- 

Karolis Uziela

PhD student
Science for Life Laboratory
Box 1031
17121 Solna, Sweden
Mob. +46 729 120 395

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