[Bioc-devel] GEOquery Warnings When Reading SOFT File

[Dario Strbenac]

library(GEOquery)
gastricChina <- getGEO("GSE65801", GSEMatrix = FALSE)

Generates warnings

> head(warnings(), 1)
Warning message:
In readLines(con, n = chunksize) :
  seek on a gzfile connection returned an internal error

Does it affect the correctness of the imported data ?

Also, experimentData(gastricChina) gives an empty result

Experiment data
  Experimenter name:  
  Laboratory:  
  Contact information:  
  Title:  
  URL:  
  PMIDs:  
  No abstract available.

whereas some of the fields are filled in on the webpage.

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Dario Strbenac
PhD Student
University of Sydney
Camperdown NSW 2050
Australia