[Bioc-devel] Trouble installing S4Vectors?

[Hervé Pagès]

Hi Charles,

What compiler do you use? Please show the entire output of
biocLite("S4Vectors") plus your sessionInfo(). Thanks!

H.

On 08/27/2015 06:19 AM, Charles Determan wrote:
> I am trying to run the basic install with biocLite.  I am running R 3.2.2
> on Ubuntu 14.04.
>
> I install the BiocInstaller package with
>
> source("http://bioconductor.org/biocLite.R")
>
> I then try again to just install S4Vectors but it errors out on the
> src_utils file with the following error:
>
> str_utils.c: In function ‘get_svn_time’:
> str_utils.c:259:2: warning: implicit declaration of function ‘tzset’
> [-Wimplicit-function-declaration]
>    tzset();
>    ^
> str_utils.c:261:18: error: ‘timezone’ undeclared (first use in this
> function)
>    utc_offset = - (timezone / 3600);
>                    ^
> str_utils.c:261:18: note: each undeclared identifier is reported only once
> for each function it appears in
> make: *** [str_utils.o] Error 1
> ERROR: compilation failed for package ‘S4Vectors’
>
> Did I miss something?
>
> Thanks,
> Charles
>
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>
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-- 
Hervé Pagès

Program in Computational Biology
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