[Bioc-devel] Workflows

[Wolfgang Huber]

Dear Dan

Thanks. What is the recommended procedure for people wanting to run the workflow on their own computer? (E.g. for teaching).
Or even to prevent them from doing odd things like using the wrong versions of R and packages?

Best wishes
Wolfgang






Il giorno Sep 29, 2014, alle ore 21:32 GMT+2, Dan Tenenbaum <dtenenba at fhcrc.org> ha scritto:

> 
> 
> ----- Original Message -----
>> From: "Wolfgang Huber" <whuber at embl.de>
>> To: bioc-devel at r-project.org
>> Sent: Monday, September 29, 2014 12:24:54 PM
>> Subject: [Bioc-devel] Workflows
>> 
>> 
>> Sorry if I have overlooked something… referring to
>> http://www.bioconductor.org/developers/how-to/workflows Is there a
>> standardized way to manage
>> - dependencies
>> - versions
>> 
>> In principle, these could be automagically computed (?), but would
>> still have to be exposed to workflow users using an afaIcs not yet
>> existing mechanism (?)
> 
> The builder simply notes any package that you invoke with library() or require() and then it creates a package and makes sure these packages are all added as dependencies in the DESCRIPTION file.
> 
> Dan
> 
> 
>> 
>> Wolfgang
>> 
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>>