[Bioc-devel] Workflows

Dan Tenenbaum dtenenba at fhcrc.org
Mon Sep 29 21:32:02 CEST 2014



----- Original Message -----
> From: "Wolfgang Huber" <whuber at embl.de>
> To: bioc-devel at r-project.org
> Sent: Monday, September 29, 2014 12:24:54 PM
> Subject: [Bioc-devel] Workflows
> 
> 
> Sorry if I have overlooked something… referring to
> http://www.bioconductor.org/developers/how-to/workflows Is there a
> standardized way to manage
> - dependencies
> - versions
> 
> In principle, these could be automagically computed (?), but would
> still have to be exposed to workflow users using an afaIcs not yet
> existing mechanism (?)

The builder simply notes any package that you invoke with library() or require() and then it creates a package and makes sure these packages are all added as dependencies in the DESCRIPTION file.

Dan


> 
> Wolfgang
> 
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