[Bioc-devel] deprecated org.Hs.egCHRLOC

[Vincent Carey]

Of note, this is not an error and seems at this time not even to be a
warning.
A message is emitted indicating the deprecation, so we have a release to
figure out how to deal with the fact that the *CHR/*CHRLOC entities will go
away
in the next release.

There are various possible workarounds.  Some more commentary will be
forthcoming.


On Tue, Sep 23, 2014 at 3:52 AM, calogero UNITO <raffaele.calogero at unito.it>
wrote:

> Hi,
> I am the maintainer of chimera package and I am getting the following
> error in the develop version:
>
> org.Hs.egCHRLOC is deprecated as the data is better accessed from
>    another location. Please use an appropriate TxDb object or package for
>    this kind of data.
>
> Could please indicate me which package I should used instead of
> org.Hs.eg.db ?
>
> Cheers
> Raf
>
> --
> ----------------------------------------
> Prof. Raffaele A. Calogero
> Bioinformatics and Genomics Unit
> MBC Centro di Biotecnologie Molecolari
> Via Nizza 52, Torino 10126
> Tel.   ++39 0116706457
> Fax    ++39 0112366457
> Mobile ++39 3333827080
> email: raffaele.calogero at unito.it
>         raffaele.calogero at gmail.com
> www:   http://www.bioinformatica.unito.it
>
>
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