[Bioc-devel] Fwd: read fcs file from CyTOF with
Mike
wjiang2 at fhcrc.org
Fri Sep 12 23:52:25 CEST 2014
'flowCore' does support CyTOF fcs as long as it follows the fcs
standard.( "FCS2.0", "FCS3.0" and "FCS3.1")
Based on your check by 'isFCSfile', Your fcs file is probably not any
one of these.
>> *From: *Hurlimann Niklaus <Niklaus.Hurlimann at chuv.ch
>> <mailto:Niklaus.Hurlimann at chuv.ch>>
>> *Subject: **[Bioc-devel] read fcs file from CyTOF with*
>> *Date: *September 12, 2014 at 6:28:49 AM PDT
>> *To: *"bioc-devel at r-project.org <mailto:bioc-devel at r-project.org>"
>> <bioc-devel at r-project.org <mailto:bioc-devel at r-project.org>>
>>
>> I tried to upload an fcs-file generated by CyTOF with read.FCS() from
>> the flowCore package. If I do the check with isFCSfile(files) it
>> gives me the answer FALSE, obviously it does not recognize the fcs
>> file as such. I am quite new in handling such type of data.
>> My question is the flowCore package compatible with CyTOF fcs or not?
>>
>> Your comments are very much appreciated
>>
>> Niklaus Hurlimann
>>
>>
>>
>>
>
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