[Bioc-devel] BiocCheck

[Dan Tenenbaum]

----- Original Message -----
> From: "Dan Tenenbaum" <dtenenba at fhcrc.org>
> To: "Kasper Daniel Hansen" <kasperdanielhansen at gmail.com>
> Cc: bioc-devel at r-project.org
> Sent: Friday, June 13, 2014 4:24:27 PM
> Subject: Re: [Bioc-devel] BiocCheck
> 
> 
> 
> ----- Original Message -----
> > From: "Kasper Daniel Hansen" <kasperdanielhansen at gmail.com>
> > To: bioc-devel at r-project.org
> > Sent: Wednesday, May 28, 2014 7:20:00 AM
> > Subject: [Bioc-devel] BiocCheck
> > 
> > 1) The hash bang in the BiocCheck script currently requires
> > intervention at
> > install time.
> > 
> > It would be much more convenient if the script could read of the
> > location
> > of R, in the same way as (say) the Sweave script can.  In fact, I
> > modified
> > the BiocCheck script as per the Sweave script but ran into problems
> > with
> > .BiocCheckFromCommandLine, and figured I better stop.
> 
> I've addressed this in BiocCheck 1.1.4. I just missed the build
> system cutoff for tonight's builds so this will be available on
> Sunday via biocLite().

BTW, you'll have to manually delete your BiocCheck script before reinstalling BiocCheck in order to get the new one (which does not hardcode any paths).

Dan


> 
> > 
> > 2) Re. the checks for coding style: it would be convenient if there
> > was an
> > option (perhaps disabled by default, perhaps not) which lists the
> > offending
> > files for each "issue".
> 
> Still haven't gotten to this yet.
> 
> Dan
> 
> 
> > 
> > Best,
> > Kasper
> > 
> > 	[[alternative HTML version deleted]]
> > 
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> >
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