[Bioc-devel] R-version

Martin Morgan mtmorgan at fhcrc.org
Mon Sep 16 21:53:11 CEST 2013


On 09/15/2013 07:12 AM, Wolfgang Huber wrote:
> Dear Julian
> thanks.
>
> Since this has come up here and elsewhere, and since the next Bioc release is coming up, let's remind ourselves that we should make development against 3.0.1 Patched (2013-09-03 r63824) -- "Good Sport".
>
> Martin - should this be noted on http://www.bioconductor.org/developers/release-schedule ?
> Not sure what relevance this has in practice, but it seems wise to eliminate unnecessary variables.
>

Thanks, the release notes have been updated. A short post to Bioc-devel with 
some additional pertinent information is forthcoming.

Martin

> 	Best wishes
> 		Wolfgang
>
>
> On Sep 15, 2013, at 4:01 pm, Julian Gehring <julian.gehring at embl.de> wrote:
>
>> Hi,
>>
>> calling 'head' or 'tail' on a 'RangedData' objects fail with the lastest builds (R: 2013-09-14 r63932, IRanges: 1.19.35).  The cause seems to be that there is no 'extractROWS' method that can be found for the signature 'RangedData'.  As an example, see:
>>
>> '''
>> library(IRanges)
>>
>> ## generate the data
>> ranges <- IRanges(c(1,2,3),c(4,5,6))
>> rd = RangedData(ranges)
>>
>> ## this fails
>> head(rd)
>> '''
>>
>> The last command returns: Error in (function (classes, fdef, mtable)  : unable to find an inherited method for function ‘extractROWS’ for signature ‘"RangedData"’
>>
>> Best wishes
>> Julian
>>
>> _______________________________________________
>> Bioc-devel at r-project.org mailing list
>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>
> _______________________________________________
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