[Bioc-devel] Problems with imported ShortRead pkg

Martin Morgan mtmorgan at fhcrc.org
Mon Nov 19 16:08:34 CET 2012

On 11/19/2012 02:15 AM, Anita Lerch wrote:
> Hi,
> even if I import IRanges, the error persist.

I've updated ShortRead (in devel, which requires using R-devel) to 1.17.5, 
addressing the import problem. This is available via svn now or biocLite 
tomorrow (Tuesday) after 10am Seattle time.

I think the 'show' problem has also been addressed, but would appreciate hearing 


> Anita
> On Fri, 2012-11-16 at 13:42 +0000, Hahne, Florian wrote:
>> Hi Anita,
>> it seems that FilterRules is defined in the IRanges package. If you want
>> to use it you will have to explicitly import it. Can't quite see how this
>> is related to importing or not importing ShortRead. The only reason why
>> this works when you require ShortRead is because it depends on IRanges and
>> will automatically attach it. This does not happen when you just import
>> from it.
>> Florian
>> On 11/16/12 12:40 PM, "Anita Lerch" <anita.lerch at fmi.ch> wrote:
>>> FilterRules

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