[Bioc-devel] Packages available in the build system

Dan Tenenbaum dtenenba at fhcrc.org
Sat Mar 31 21:00:51 CEST 2012


On Sat, Mar 31, 2012 at 9:46 AM, Nicolas Delhomme <delhomme at embl.de> wrote:
> Hi,
>
> I'm thinking about using the Rcompression library for a package I'm writing and it is only available from the http://www.omegahat.org/R repository. I was wondering if this repo was used by the Bioc build system.

No, it is not.
You can see the repositories used by the build system if you do this:
library(BiocInstaller)
biocinstallRepos()

Dan


> If not, I'd welcome pointers to libraries with similar capabilities, e.g. I'm retrieving compressed fasta files with Rcurl and would like to uncompress them in R.
>
> Thanks!
>
> Nico
>
> ---------------------------------------------------------------
> Nicolas Delhomme
>
> Genome Biology Computational Support
>
> European Molecular Biology Laboratory
>
> Tel: +49 6221 387 8310
> Email: nicolas.delhomme at embl.de
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>
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