[Bioc-devel] Bioconductor code search (beta)

[Itoshi NIKAIDO]

Hi Robert and bioc-devel

Thank you for your comment.

I am implementing "More like this" function to find similar functionality code.
This function will provide an simple automatic recommendation of similar
source code when you look a file in bioconductor package.

Example:

1. Search your keyword "trimLRPatterns"
http://search.bioconductor.jp/codes?query=trimLRPatterns

2. Click "trimLRPatterns.R" and just look sidebar
http://search.bioconductor.jp/codes/4540

-itoshi

Itoshi NIKAIDO, Ph.D.
FF20 8296 ED6F D9E5 7D05  8A0F 65D8 C2F5 C8D7 2CE2


On Thu, Jun 7, 2012 at 10:29 PM, Robert M. Flight <rflight79 at gmail.com> wrote:
> Itoshi,
>
> This is really useful. Just by searching for a term in my own package,
> I am now finding other packages that may have similar functionality
> that I was not aware of before. Cool idea!
>
> -Robert
>
> Robert M. Flight, Ph.D.
> University of Louisville Bioinformatics Laboratory
> University of Louisville
> Louisville, KY
>
> PH 502-852-1809 (HSC)
> PH 502-852-0467 (Belknap)
> EM robert.flight at louisville.edu
> EM rflight79 at gmail.com
> robertmflight.blogspot.com
> bioinformatics.louisville.edu/lab
> github.com/rmflight/general/wiki
>
> The most exciting phrase to hear in science, the one that heralds new
> discoveries, is not "Eureka!" (I found it!) but "That's funny ..." -
> Isaac Asimov
>
>
> On Tue, Jun 5, 2012 at 1:33 PM, Itoshi NIKAIDO <dritoshi at gmail.com> wrote:
>> Dear bioconductor developers
>>
>> I'm Itoshi Nikaido, developer of BrainStars package and maintainer of
>> Japan mirror of Bioconductor.
>>
>> http://www.bioconductor.org/packages/release/bioc/html/BrainStars.html
>> http://bioconductor.jp/
>>
>> Today, I am happy to announce of opening a full code search engine for
>> all bioconductor package (only devel version).  The site has following features:
>>
>> - fast full text search
>> - code highlighting
>> - facet search by package name
>>
>> This site is beta version. I have some plans to improve and add functions.
>>
>> - Optimization of tokenizer
>> - Query keyword highlighting
>> - Linking to official SVN site in each code
>> - Permalink have to be change nonsense code id to package file path
>>
>> and so on.
>>
>> Bioconductor Code Search
>> http://search.bioconductor.jp/
>>
>> If you have idea for improving the site, Please comment to me.
>>
>> Thanks
>>
>> --
>> Itoshi NIKAIDO, Ph.D.
>> RIKEN Center for Developmental Biology
>> D-E203, 2-2-3, Minatojima-minamimachi, Chuo-ku,
>> Kobe, Hyogo 650-0047, Japan
>> http://www.hackingisbelieving.org/
>>
>> _______________________________________________
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