[Bioc-devel] Bioconductor code search (beta)

[Itoshi NIKAIDO]

Dear Martin and bioc-devel

I improved a search result to a optimize tokenizer.

We search "trimLRPatterns" and got hits in ShortRead and Biostrings.
http://search.bioconductor.jp/codes?query=trimLRPatterns

Now, Bioconductor code search is a little bit slow, because the site is
temporally running on development mode of Ruby on Rails. It's means
that the system do not use a cache for search result.

Thanks

itoshi

--
Itoshi NIKAIDO, Ph.D.
RIKEN Center for Developmental Biology
D-E203, 2-2-3, Minatojima-minamimachi, Chuo-ku,
Kobe, Hyogo 650-0047, Japan
http://www.hackingisbelieving.org/

Itoshi NIKAIDO, Ph.D.
FF20 8296 ED6F D9E5 7D05  8A0F 65D8 C2F5 C8D7 2CE2


On Wed, Jun 6, 2012 at 3:06 AM, Itoshi NIKAIDO <dritoshi at gmail.com> wrote:
> Hi Martin
>
> Thank you for your quick response. Now, i am improving a tokenizer
> to optimize index of database.
>
> Itoshi
>
> Itoshi NIKAIDO, Ph.D.
> FF20 8296 ED6F D9E5 7D05  8A0F 65D8 C2F5 C8D7 2CE2
>
>
> On Wed, Jun 6, 2012 at 2:36 AM, Martin Morgan <mtmorgan at fhcrc.org> wrote:
>> On 6/5/2012 10:33 AM, Itoshi NIKAIDO wrote:
>>>
>>> Dear bioconductor developers
>>>
>>> I'm Itoshi Nikaido, developer of BrainStars package and maintainer of
>>> Japan mirror of Bioconductor.
>>>
>>> http://www.bioconductor.org/packages/release/bioc/html/BrainStars.html
>>> http://bioconductor.jp/
>>>
>>> Today, I am happy to announce of opening a full code search engine for
>>> all bioconductor package (only devel version).  The site has following
>>> features:
>>>
>>> - fast full text search
>>> - code highlighting
>>> - facet search by package name
>>>
>>> This site is beta version. I have some plans to improve and add functions.
>>>
>>> - Optimization of tokenizer
>>> - Query keyword highlighting
>>> - Linking to official SVN site in each code
>>> - Permalink have to be change nonsense code id to package file path
>>>
>>> and so on.
>>>
>>> Bioconductor Code Search
>>> http://search.bioconductor.jp/
>>>
>>> If you have idea for improving the site, Please comment to me.
>>
>>
>> neat; I searched for
>>
>> trimLRPatterns
>>
>> and got hits in ShortRead but not Biostrings (where it is defined).
>>
>> Martin
>>>
>>>
>>> Thanks
>>>
>>> --
>>> Itoshi NIKAIDO, Ph.D.
>>> RIKEN Center for Developmental Biology
>>> D-E203, 2-2-3, Minatojima-minamimachi, Chuo-ku,
>>> Kobe, Hyogo 650-0047, Japan
>>> http://www.hackingisbelieving.org/
>>>
>>> _______________________________________________
>>> Bioc-devel at r-project.org mailing list
>>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>>
>>
>>
>> --
>> Dr. Martin Morgan, PhD
>> Fred Hutchinson Cancer Research Center
>> 1100 Fairview Ave. N.
>> PO Box 19024 Seattle, WA 98109
>>