[Bioc-devel] Bioconductor code search (beta)
dritoshi at gmail.com
Wed Jun 6 23:18:59 CEST 2012
Dear Martin and bioc-devel
I improved a search result to a optimize tokenizer.
We search "trimLRPatterns" and got hits in ShortRead and Biostrings.
Now, Bioconductor code search is a little bit slow, because the site is
temporally running on development mode of Ruby on Rails. It's means
that the system do not use a cache for search result.
Itoshi NIKAIDO, Ph.D.
RIKEN Center for Developmental Biology
D-E203, 2-2-3, Minatojima-minamimachi, Chuo-ku,
Kobe, Hyogo 650-0047, Japan
Itoshi NIKAIDO, Ph.D.
FF20 8296 ED6F D9E5 7D05 8A0F 65D8 C2F5 C8D7 2CE2
On Wed, Jun 6, 2012 at 3:06 AM, Itoshi NIKAIDO <dritoshi at gmail.com> wrote:
> Hi Martin
> Thank you for your quick response. Now, i am improving a tokenizer
> to optimize index of database.
> Itoshi NIKAIDO, Ph.D.
> FF20 8296 ED6F D9E5 7D05 8A0F 65D8 C2F5 C8D7 2CE2
> On Wed, Jun 6, 2012 at 2:36 AM, Martin Morgan <mtmorgan at fhcrc.org> wrote:
>> On 6/5/2012 10:33 AM, Itoshi NIKAIDO wrote:
>>> Dear bioconductor developers
>>> I'm Itoshi Nikaido, developer of BrainStars package and maintainer of
>>> Japan mirror of Bioconductor.
>>> Today, I am happy to announce of opening a full code search engine for
>>> all bioconductor package (only devel version). The site has following
>>> - fast full text search
>>> - code highlighting
>>> - facet search by package name
>>> This site is beta version. I have some plans to improve and add functions.
>>> - Optimization of tokenizer
>>> - Query keyword highlighting
>>> - Linking to official SVN site in each code
>>> - Permalink have to be change nonsense code id to package file path
>>> and so on.
>>> Bioconductor Code Search
>>> If you have idea for improving the site, Please comment to me.
>> neat; I searched for
>> and got hits in ShortRead but not Biostrings (where it is defined).
>>> Itoshi NIKAIDO, Ph.D.
>>> RIKEN Center for Developmental Biology
>>> D-E203, 2-2-3, Minatojima-minamimachi, Chuo-ku,
>>> Kobe, Hyogo 650-0047, Japan
>>> Bioc-devel at r-project.org mailing list
>> Dr. Martin Morgan, PhD
>> Fred Hutchinson Cancer Research Center
>> 1100 Fairview Ave. N.
>> PO Box 19024 Seattle, WA 98109
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