[Bioc-devel] commit changes to data packages

[Dan Tenenbaum]

On Wed, Jul 11, 2012 at 9:21 AM, Dan Tenenbaum <dtenenba at fhcrc.org> wrote:
> On Wed, Jul 11, 2012 at 3:30 AM, Laurent Gatto <laurent.gatto at gmail.com> wrote:
>> Dear all,
>>
>> I have checked a complete working copy of a data package out, as
>> described in [1]. After updating infrastructure files (DESCRIPTION and
>> NEWS) and the actual data, svn status tells me the following
>> ?       data
>> M       DESCRIPTION
>> M       NEWS
>> ?       inst/extdata
>>
>> Should I 'svn add data inst/data' and then commit, as usual, or is
>> there an alternative way to explicitly commit  data files to the
>> external data_store separately?
>>
>
> Yes, cd to data and then do your commit there.
> The svn status above seems to indicate that 'data' is not part of svn,
> but actually it is. It is part of a different svn repository than your
> current directory.
>

Just to clarify, do NOT 'svn add data inst/data'.
Instead, cd to those directories and do the commit there. 'svn info'
will show you that data and inst/data are working copies from a
repository that is separate from your package's top-level directory.
Sorry for any confusion.
Dan



> Dan
>
>
>
>> Thank you in advance,
>>
>> Best wishes,
>>
>> Laurent
>>
>>
>> [1] http://www.bioconductor.org/developers/source-control/
>>
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