[Bioc-devel] commit changes to data packages

[Laurent Gatto]

Ok, thanks for the clarification.

Laurent

On 11 July 2012 11:42, Vincent Carey <stvjc at channing.harvard.edu> wrote:
> README.txt should be accessible in experiment/pkgs folder; attached if not
> (and if not scrubbed...) ... use  a file called external_data_store.txt in
> package top folder to specify which pieces come out of separate data_store
> svn folder.
>
>
> On Wed, Jul 11, 2012 at 12:39 PM, Vincent Carey <stvjc at channing.harvard.edu>
> wrote:
>>
>> alternative way.  i will find the doc.  basically there is a data_store
>> folder parallel to pkgs and the add_data.py utility works with that
>> so that software and doc can be maintained separately from voluminous
>> data.
>>
>>
>> On Wed, Jul 11, 2012 at 12:30 PM, Laurent Gatto <laurent.gatto at gmail.com>
>> wrote:
>>>
>>> Dear all,
>>>
>>> I have checked a complete working copy of a data package out, as
>>> described in [1]. After updating infrastructure files (DESCRIPTION and
>>> NEWS) and the actual data, svn status tells me the following
>>> ?       data
>>> M       DESCRIPTION
>>> M       NEWS
>>> ?       inst/extdata
>>>
>>> Should I 'svn add data inst/data' and then commit, as usual, or is
>>> there an alternative way to explicitly commit  data files to the
>>> external data_store separately?
>>>
>>> Thank you in advance,
>>>
>>> Best wishes,
>>>
>>> Laurent
>>>
>>>
>>> [1] http://www.bioconductor.org/developers/source-control/
>>>
>>> _______________________________________________
>>> Bioc-devel at r-project.org mailing list
>>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>>
>>