[Bioc-devel] Obtain unitTest reports from build machines ?
dtenenba at fhcrc.org
Mon Jan 30 19:04:59 CET 2012
On Mon, Jan 30, 2012 at 12:22 AM, Steffen Neumann <sneumann at ipb-halle.de> wrote:
> a while ago one of the packages I am involved in (xcms)
> turned "red" for the check on windows builds. As there was no
> commit from our side at or before the failure, it must be
> some other interaction or side-effect.
> Getting the output of the actual RUnit test failure
> would be an enormous help, and has the top rank
> on my wishlist for the build machines.
What you see in the build report is the full output of
R CMD check
as well as the contents of the file 00install.out.
I ran the check for xcms manually and I see that R crashes with the
Running the tests in 'tests/doRUnit.R' failed.
Last 13 lines of output:
Loading required package: caTools
Loading required package: bitops
tracemem[0x0000000008140960 -> 0x0000000008140960]: data.frame eval
h rcpp_tryCatch .External <Anonymous> .local header header mzRRawData
xcmsRaw func system.
time doTryCatch tryCatchOne tryCatchList tryCatch try .executeTestCase
Timing stopped at: 12.75 0.22 12.97
Error in structure(list(message = as.character(message), call = call), :
value of 'SET_ATTRIB' must be a pairlist or NULL, not a 'character'
In addition: There were 50 or more warnings (use warnings() to see
the first 50)
Executing test function test.rawMat ...
I'll look into this further, but there isn't much of a way for us to
capture the output when R crashes unexpectedly.
> IPB Halle AG Massenspektrometrie & Bioinformatik
> Dr. Steffen Neumann http://www.IPB-Halle.DE
> Weinberg 3 http://msbi.bic-gh.de
> 06120 Halle Tel. +49 (0) 345 5582 - 1470
> +49 (0) 345 5582 - 0
> sneumann(at)IPB-Halle.DE Fax. +49 (0) 345 5582 - 1409
> Bioc-devel at r-project.org mailing list
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