[Bioc-devel] Help for NAMESPACE

[Dan Tenenbaum]

Hi Raffaele,

On Sun, Jan 29, 2012 at 2:43 PM, rcaloger <raffaele.calogero at gmail.com> wrote:
> Hi,
> I am the maintainer of oneChannelGUI package.
> I have seen that my NAMESPACE in devel 2.10 produces the following warnings:
>
> Warning: Functions for exporting methods must have been made generic, explicitly or implicitly; not true when loading 'Category' for 'summary'
> Warning: Functions for exporting methods must have been made generic, explicitly or implicitly; not true when loading 'GOstats' for 'summary'
>
> I tried various modification to my NAMESPACE but I only managed to
> increase the warnings.
> This is the NAMESPACE:
> importFrom(Category, summary)
> importFrom(GOstats, summary)
> importMethodsFrom(GOstats)
> importFrom(AnnotationDbi, summary)
> importMethodsFrom(IRanges, sapply, as.data.frame)
>
> #  All functions exported other than those starting with "."
> exportPattern("^[^\\.]")
> exportMethods(summary, sapply, as.data.frame)
> export(summary)
>
> Can somebody help me in solving this issue?

Please see this thread on R-devel:
https://stat.ethz.ch/pipermail/r-devel/2012-January/062978.html

We discussed this last week and I think we will be working to resolve
it this week; we will probably be contacting package maintainers with
recommended changes.

Thanks,
Dan



> Cheers
> Raffaele
>
> --
>
> ----------------------------------------
> Prof. Raffaele A. Calogero
> Bioinformatics and Genomics Unit
> MBC Centro di Biotecnologie Molecolari
> Via Nizza 52, Torino 10126
> tel.   ++39 0116706457
> Fax    ++39 0112366457
> Mobile ++39 3333827080
> email: raffaele.calogero at unito.it
>        raffaele[dot]calogero[at]gmail[dot]com
> www:   http://www.bioinformatica.unito.it
>
>
>
>        [[alternative HTML version deleted]]
>
> _______________________________________________
> Bioc-devel at r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/bioc-devel