[Bioc-devel] runmean and NA values

Valerie Obenchain vobencha at fhcrc.org
Fri Apr 13 23:36:44 CEST 2012

Hi Florian,

Thanks for the reminder. I can pick this up and will post back here when 
it's done.


On 04/13/2012 08:06 AM, Hahne, Florian wrote:
> Hi all,
> Runmean and the related run* functions currently can't deal with NA
> values. Kasper asked for a na.rm argument a long while ago and back then
> Patrick agreed to add this in one of the upcoming releases
> (https://stat.ethz.ch/pipermail/bioconductor/2010-August/034982.html)
> Is that still on someone's radar? I would really like to see that in
> runmean for the same reasons Kasper pointed out: NAs and zeros are not
> necessarily equivalent in Rle vectors, and I would like to be able to
> smooth data that contains NAs.
> Thanks,
> Florian
> Florian Hahne
> Novartis Institute For Biomedical Research
> Translational Sciences / Preclinical Safety / PCS Informatics
> Expert Data Integration and Modeling Bioinformatics
> CHBS, WKL-135.2.26
> Novartis Institute For Biomedical Research, Werk Klybeck
> Klybeckstrasse 141
> CH-4057 Basel
> Switzerland
> Phone: +41 61 6967127
> Email : florian.hahne at novartis.com
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