[Bioc-devel] DEG data analysis (Pascual)

[Thomas J Hardcastle]

You might want to take a look at the baySeq package, which allows 
multiple comparisons.

Best wishes,

Tom Hardcastle
>
> ----------------------------------------------------------------------
>
> Message: 1
> Date: Fri, 09 Sep 2011 10:06:35 +0200
> From: Pascual <Laura.Pascual at avignon.inra.fr>
> To: bioc-devel at r-project.org
> Subject: [Bioc-devel] DEG data analysis
> Message-ID: <4E69C90B.8050800 at avignon.inra.fr>
> Content-Type: text/plain; charset=ISO-8859-1; format=flowed
>
> Hello,
>
> I have a set of DEG illumina data, coming from 12 different accessions 
> with replicates of each samples. I have been taking a look at edgeR and 
> DESeq to analyse the data, and extract differential expressed tags. 
> However all analysis seem to be based in pair comparasions. Is there any 
> packge to made comparesions between a greater number of groups? Do you 
> know if anybody is planning to add this analysis in any existing package?
>
> Thanks
>
> Laura
>
>
>
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> End of Bioc-devel Digest, Vol 90, Issue 6
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-- 
Dr. Thomas J. Hardcastle

Department of Plant Sciences
University of Cambridge
Downing Street
Cambridge, CB2 3EA
United Kingdom