[Bioc-devel] Minor detail with mirrors

[Sean Davis]

Thanks, Hervé.

Sean

2011/11/2 Hervé Pagès <hpages at fhcrc.org>:
> Hi Sean,
>
> This is addressed in BiocInstaller 1.3.2.
>
> Cheers,
> H.
>
>
> On 11-11-02 11:31 AM, Sean Davis wrote:
>> Hi, all.
>>
>> I'm using a fresh version of R and BiocInstaller and noticed that
>> chooseBioCmirror() does not effectively change the bioconductor
>> repository.  Perhaps this was by design until the repositories sync
>> up, but just wanted to bring it up just in case.
>>
>> Thanks,
>> Sean
>>
>>> chooseBioCmirror()
>> BioC mirror
>>
>> 1: Seattle (USA)
>> 2: Bethesda (USA)
>> 3: Dortmund (Germany)
>> 4: Bergen (Norway)
>> 5: Cambridge (UK)
>>
>> Selection: 2
>>> options('BioC_mirror')
>> $BioC_mirror
>>                           Bethesda (USA)
>> "http://watson.nci.nih.gov/bioc_mirror"
>>> BiocInstaller::biocinstallRepos()
>>                                                              BioCsoft
>>                          "http://bioconductor.org/packages/2.10/bioc"
>>                                                                  CRAN
>>                               "http://watson.nci.nih.gov/cran_mirror"
>>                                                               BioCann
>> "http://watson.nci.nih.gov/bioc_mirror/packages/2.9/data/annotation"
>>                                                               BioCexp
>>               "http://bioconductor.org/packages/2.10/data/experiment"
>>                                                             BioCextra
>>                         "http://bioconductor.org/packages/2.10/extra"
>>> sessionInfo()
>> R version 2.15.0 Under development (unstable) (--)
>> Platform: x86_64-unknown-linux-gnu (64-bit)
>>
>> locale:
>>   [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C
>>   [3] LC_TIME=en_US.UTF-8        LC_COLLATE=C
>>   [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8
>>   [7] LC_PAPER=C                 LC_NAME=C
>>   [9] LC_ADDRESS=C               LC_TELEPHONE=C
>> [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
>>
>> attached base packages:
>> [1] stats     graphics  grDevices utils     datasets  methods   base
>>
>> other attached packages:
>> [1] BiocInstaller_1.3.1
>>
>> loaded via a namespace (and not attached):
>> [1] tools_2.15.0
>>
>> _______________________________________________
>> Bioc-devel at r-project.org mailing list
>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>
>
> --
> Hervé Pagès
>
> Program in Computational Biology
> Division of Public Health Sciences
> Fred Hutchinson Cancer Research Center
> 1100 Fairview Ave. N, M1-B514
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> Seattle, WA 98109-1024
>
> E-mail: hpages at fhcrc.org
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>