[Bioc-devel] Minor detail with mirrors

[Hervé Pagès]

Hi Sean,

This is addressed in BiocInstaller 1.3.2.

Cheers,
H.


On 11-11-02 11:31 AM, Sean Davis wrote:
> Hi, all.
>
> I'm using a fresh version of R and BiocInstaller and noticed that
> chooseBioCmirror() does not effectively change the bioconductor
> repository.  Perhaps this was by design until the repositories sync
> up, but just wanted to bring it up just in case.
>
> Thanks,
> Sean
>
>> chooseBioCmirror()
> BioC mirror
>
> 1: Seattle (USA)
> 2: Bethesda (USA)
> 3: Dortmund (Germany)
> 4: Bergen (Norway)
> 5: Cambridge (UK)
>
> Selection: 2
>> options('BioC_mirror')
> $BioC_mirror
>                           Bethesda (USA)
> "http://watson.nci.nih.gov/bioc_mirror"
>> BiocInstaller::biocinstallRepos()
>                                                              BioCsoft
>                          "http://bioconductor.org/packages/2.10/bioc"
>                                                                  CRAN
>                               "http://watson.nci.nih.gov/cran_mirror"
>                                                               BioCann
> "http://watson.nci.nih.gov/bioc_mirror/packages/2.9/data/annotation"
>                                                               BioCexp
>               "http://bioconductor.org/packages/2.10/data/experiment"
>                                                             BioCextra
>                         "http://bioconductor.org/packages/2.10/extra"
>> sessionInfo()
> R version 2.15.0 Under development (unstable) (--)
> Platform: x86_64-unknown-linux-gnu (64-bit)
>
> locale:
>   [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C
>   [3] LC_TIME=en_US.UTF-8        LC_COLLATE=C
>   [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8
>   [7] LC_PAPER=C                 LC_NAME=C
>   [9] LC_ADDRESS=C               LC_TELEPHONE=C
> [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
>
> attached base packages:
> [1] stats     graphics  grDevices utils     datasets  methods   base
>
> other attached packages:
> [1] BiocInstaller_1.3.1
>
> loaded via a namespace (and not attached):
> [1] tools_2.15.0
>
> _______________________________________________
> Bioc-devel at r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/bioc-devel


-- 
Hervé Pagès

Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N, M1-B514
P.O. Box 19024
Seattle, WA 98109-1024

E-mail: hpages at fhcrc.org
Phone:  (206) 667-5791
Fax:    (206) 667-1319