[Bioc-devel] Move MethyLumiM class from lumi to methylumi package

[Pan Du]

Hi Sean 

I have moved the MethyLumiM class and related methods from lumi to methylumi
package. And I created a AllGenerics.R file to keep all generic functions
and common classes used by both MethyLumiM and MethyLumiSet classes. Also a
NEWS file is created in the methylumi package root directory. Please check
them. If everything is fine, I will remove these files from the lumi
package. Thanks!

Have a nice weekend,

Pan


On 1/20/11 9:40 PM, "Sean Davis" <sdavis2 at mail.nih.gov> wrote:

> Hi, Pan.
> 
> I'll take a quick look.  If they look like they will fit nicely, then I'll
> add them to methylumi.  Would you be comfortable with moving the MethyLumiM
> code over to methylumi?  I'd like to use MethyLumiM stuff as well and I
> would like to avoid circular dependencies if possible (methylumi depends on
> lumi while lumi depends on methylumi).  That would also make it a bit easier
> to keep the classes together, particularly when I put in the idat read code.
>  However, it is up to you....
> 
> Sean
> 
>