[Bioc-devel] GenomeData Constructor

[Dario Strbenac]

That worked for me, surprisingly.

---- Original message ----
>Date: Thu, 31 Mar 2011 18:01:00 -0700
>From: Michael Lawrence <lawrence.michael at gene.com>  
>Subject: Re: [Bioc-devel] GenomeData Constructor  
>To: D.Strbenac at garvan.org.au
>Cc: bioc-devel at r-project.org
>
>   Try reinstalling the package.
>
>   Michael
>
>   On Thu, Mar 31, 2011 at 4:00 PM, Dario Strbenac
>   <D.Strbenac at garvan.org.au> wrote:
>
>     Hello,
>
>     The example in the manual doesn't work for me, and
>     I have all of the current release packages.
>
>     The code I try it with is:
>
>     library(BSgenome)
>     gd <- GenomeData(list(chr1 = IRanges(1, 10), chrX
>     = IRanges(2, 5)))
>
>     I get:
>
>     Error in validObject(.Object) :
>      invalid class "GenomeData" object: superclass
>     "Vector" not defined in the environment of the
>     object's class
>
>     > sessionInfo()
>     R version 2.12.2 (2011-02-25)
>     Platform: x86_64-unknown-linux-gnu (64-bit)
>
>     locale:
>      [1] LC_CTYPE=en_AU.UTF-8       LC_NUMERIC=C
>      [3] LC_TIME=en_AU.UTF-8      
>      LC_COLLATE=en_AU.UTF-8
>      [5] LC_MONETARY=C            
>      LC_MESSAGES=en_AU.UTF-8
>      [7] LC_PAPER=en_AU.UTF-8       LC_NAME=C
>      [9] LC_ADDRESS=C              
>     LC_TELEPHONE=C
>     [11] LC_MEASUREMENT=en_AU.UTF-8
>     LC_IDENTIFICATION=C
>
>     attached base packages:
>     [1] stats     graphics  grDevices utils    
>     datasets  methods   base
>
>     other attached packages:
>     [1] BSgenome_1.18.3     Biostrings_2.18.4  
>     GenomicRanges_1.2.3
>     [4] IRanges_1.8.9
>
>     loaded via a namespace (and not attached):
>     [1] Biobase_2.10.0
>
>     What can I do to get it running ?
>
>     --------------------------------------
>     Dario Strbenac
>     Research Assistant
>     Cancer Epigenetics
>     Garvan Institute of Medical Research
>     Darlinghurst NSW 2010
>     Australia
>
>     _______________________________________________
>     Bioc-devel at r-project.org mailing list
>     https://stat.ethz.ch/mailman/listinfo/bioc-devel


--------------------------------------
Dario Strbenac
Research Assistant
Cancer Epigenetics
Garvan Institute of Medical Research
Darlinghurst NSW 2010
Australia