[Bioc-devel] check package with 2.12.0 alpha

[Hervé Pagès]

Hi Tarca,

On 09/22/2010 08:15 AM, Tarca, Adi wrote:
>
> Hi all,
> I try to check my package with 2.12.0 alpha on windows and I get the error below. Any ideas what cause it?
> Thanks,
> Adi
>
> Z:\PRB>c:\Progs\R\R-2.12.0alpha\bin\R CMD check SPIA
> * using log directory 'Z:/PRB/SPIA.Rcheck'
> * using R version 2.12.0 alpha (2010-09-20 r52948)
> * using platform: i386-pc-mingw32 (32-bit)
> * using session charset: ISO8859-1
> * checking for file 'SPIA/DESCRIPTION' ... OK
> * this is package 'SPIA' version '1.7.1'
> * checking package name space information ... OK
> * checking package dependencies ... OK
> * checking if this is a source package ... OK
> Error in system2("file", "--version", TRUE, TRUE) : '"file"' not found
> Execution halted

This seems to be related to the chaotic behavior of 'R CMD build'
and 'R CMD check' with recent R-2.12 on Windows. See:

   https://stat.ethz.ch/pipermail/r-devel/2010-September/058464.html

Hopefully the R people will be able to do something about this
very soon.

Cheers,
H.


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-- 
Hervé Pagès

Program in Computational Biology
Division of Public Health Sciences
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