[Bioc-devel] matchprobes

[Kasper Daniel Hansen]

Sure, Biostrings is the better place.  I was wondering (caring) about
the probe annotation packages but you seem to have moved the
probetable functions (like print.probetable) into AnnotationDbi which
looks fine as well.

Thanks for the explanation,
Kasper

2010/9/19 Hervé Pagès <hpages at fhcrc.org>:
> Hi Kasper,
>
> On 09/19/2010 01:36 PM, Kasper Daniel Hansen wrote:
>>
>> matchprobes seems to be absent from the devel branch when I use
>> R-2.12-alpha with biocLite?  Perhaps this is a fluke because I have
>> installed it earlier in the year under R-devel (then R-2.12), but it
>> is also absent from the devel build webpage:
>>   http://bioconductor.org/checkResults/devel/bioc-LATEST/
>
> Yes matchprobes has been deprecated for a while (more than 2 releases
> ago) and now it's gone. Note that at the same time we made it
> a deprecated package, we also moved most of its content to Biostrings:
>    basecontent()
>    countbases()
>    complementSeq()
>    reverseSeq()
>    revcompDNA()
>    revcompRNA()
>    longestConsecutive()
>    matchprobes()
> Most of this stuff is deprecated too. See the individual man pages
> for the details.
>
> Cheers,
> H.
>
>
>>
>> Kasper
>>
>> _______________________________________________
>> Bioc-devel at stat.math.ethz.ch mailing list
>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>
>
> --
> Hervé Pagès
>
> Program in Computational Biology
> Division of Public Health Sciences
> Fred Hutchinson Cancer Research Center
> 1100 Fairview Ave. N, M2-B876
> P.O. Box 19024
> Seattle, WA 98109-1024
>
> E-mail: hpages at fhcrc.org
> Phone:  (206) 667-5791
> Fax:    (206) 667-1319
>