[Bioc-devel] biocLite() on R-devel installs BioC 2.7

[Hervé Pagès]

oops, didn't see this was already answered and fixed.
Sorry for the noise.

H.

On 10/26/2010 02:07 AM, Robert Castelo wrote:
> thanks Dan!!
> robert.
>
> On Mon, 2010-10-25 at 11:11 -0700, Dan Tenenbaum wrote:
>> On Mon, Oct 25, 2010 at 3:08 AM, Robert Castelo<robert.castelo at upf.edu>  wrote:
>>> hi,
>>>
>>> today i installed the current R-devel in order to resume development of
>>> my package on the development branch, but once R-devel (=2.13) is
>>> installed, the biocLite() function installs BioC 2.7 instead of BioC 2.8
>>> while at the build/check results page in
>>>
>>> http://bioconductor.org/checkResults/2.8/bioc-LATEST
>>>
>>> everything looks like the devel branch is properly created. here is what
>>> it get when i do biocLite() on R 2.13:
>>>
>>> source("http://www.bioconductor.org/biocLite.R")
>>> BioC_mirror = http://www.bioconductor.org
>>> Change using chooseBioCmirror().
>>> biocLite()
>>> Using R version 2.13.0, biocinstall version 2.7.4.
>>> Installing Bioconductor version 2.7 packages:
>>>   [1] "affy"          "affydata"      "affyPLM"       "affyQCReport"
>>>   [5] "annaffy"       "annotate"      "Biobase"       "biomaRt"
>>>   [9] "Biostrings"    "DynDoc"        "gcrma"         "genefilter"
>>> [13] "geneplotter"   "GenomicRanges" "hgu95av2.db"   "limma"
>>> [17] "marray"        "multtest"      "vsn"           "xtable"
>>> Please wait...
>>>
>>> [... installation follows without problems ...]
>>>
>>> then i load Biobase and the session information says the following:
>>>
>>> library(Biobase)
>>> [.. output removed .. ]
>>> sessionInfo()
>>> R version 2.13.0 Under development (unstable) (2010-10-24 r53413)
>>> Platform: x86_64-unknown-linux-gnu (64-bit)
>>>
>>> locale:
>>> [1] C
>>>
>>> attached base packages:
>>> [1] stats     graphics  grDevices utils     datasets  methods
>>> base
>>>
>>> other attached packages:
>>> [1] Biobase_2.10.0
>>>
>>>
>>> while on the website, the development Biobase version is 2.11
>>>
>>>
>>
>> This is fixed now.
>> Thanks!
>> Dan
>>
>
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-- 
Hervé Pagès

Program in Computational Biology
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