[Bioc-devel] library(Biostrings) gives me an error

[James W. MacDonald]

Hi Pierre,

Pierre-Yves wrote:
> Dear list,
> 
> I am facing the following error and google is quite quiet to help me.\
> 
> Has anyone seen it before ?
> Note that I have the dependencies list on the website installed (I can
> send my library() is needed).
> 
> Thanks for your help,
> 
> Best regards,
> 
> Pierre
> 
> 
>> library(Biostrings)
> Loading required package: IRanges
> 
> Attaching package: 'IRanges'
> 
> 
> 	The following object(s) are masked from package:base :
> 
> 	 cbind,
> 	 duplicated,
> 	 order,
> 	 pmax,
> 	 pmax.int,
> 	 pmin,
> 	 pmin.int,
> 	 rank,
> 	 rbind,
> 	 rep.int,
> 	 sapply,
> 	 sort,
> 	 table,
> 	 unique 
> 
> Error in insertMethod(m1, as.character(sigi), args, el(methods, i),
> FALSE) : 
>   inserting method with invalid signature matching argument '...' to
> class "ANY"
> In addition: Warning messages:
> 1: Multiple methods tables found for 'score' 
> 2: Multiple methods tables found for 'substr' 
> 3: Multiple methods tables found for 'substring' 
> 4: Multiple methods tables found for 'chartr' 
> Error: package/namespace load failed for 'Biostrings'
>> sessionInfo()
> R version 2.8.1 (2008-12-22) 
> x86_64-redhat-linux-gnu 
> 
> locale:
> LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=en_US.UTF-8;LC_MONETARY=C;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C
> 
> attached base packages:
> [1] stats     graphics  grDevices utils     datasets  methods
> base     
> 
> other attached packages:
> [1] IRanges_1.1.55

This is a development version of IRanges in a release version of R. If 
you want to run development versions of packages, then use a devel 
version of R. And regardless of the R version you use, install packages 
using biocLite() so you get the correct package version for the R you 
are using.

Best,

Jim




> 
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-- 
James W. MacDonald, M.S.
Biostatistician
Douglas Lab
University of Michigan
Department of Human Genetics
5912 Buhl
1241 E. Catherine St.
Ann Arbor MI 48109-5618
734-615-7826