[Bioc-devel] netCDF on pelham

[hpages at fhcrc.org]

Hi Steffen,

Installing the missing libraries is still a work-in-progress on pelham.
Unfortunately using tools like fink or Darwinports doesn't work because
they don't support multi-arch compilation (BioC universal binary packages
need to be linked against fat libraries) so many things need to be compiled
by hand. NetCDF is on the list and should be ready soon.

Thanks for your patience!

Cheers,
H.


Quoting sneumann <sneumann at ipb-halle.de>:

> [Re-sent without pgp signature]
> 
> Hi,
> 
> I'd like to know whether and possibly when 
> we can have NetCDF development libraries on pelham (MacOSX).
> 
> XCMS is complaining 
> 
> 	gcc-4.2 -arch i386 -std=gnu99
> -I/Library/Frameworks/R.framework/Resources/include
> -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include
> -I/sw/include -D_LARGEFILE_SOURCE -I/usr/local/include    -fPIC  -g -O2
> -march=nocona -c netCDF.c -o netCDF.o
> 	netCDF.c:2:20: error: netcdf.h: No such file or directory
> 
> I don't know which software repositories are used on pelham, 
> or whether they're in gcc's standard include path,
> but I know that there is a package on fink.sf.net.
> 
> Yours,
> Steffen
> 
> -- 
> IPB Halle                    AG Massenspektrometrie & Bioinformatik
> Dr. Steffen Neumann          http://www.IPB-Halle.DE
> Weinberg 3                   http://msbi.bic-gh.de
> 06120 Halle                  Tel. +49 (0) 345 5582 - 1470
>                                   +49 (0) 345 5582 - 0
> sneumann(at)IPB-Halle.DE     Fax. +49 (0) 345 5582 - 1409
> 
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