[Bioc-devel] [BioC] package for human ST gene arrays?
bcarvalh at jhsph.edu
Tue Oct 30 00:31:54 CET 2007
Those are great news... have been waiting for this for a while! let
us know how things go.
On Oct 29, 2007, at 6:58 PM, Kasper Daniel Hansen wrote:
> We have been a bit slow on that end, mainly because
> 1) while there is code in the SDK for parsing PGF, the interface is
> different from the usual one - in other words Affy has added code
> and has not bothered to fully add the interface.
> 2) none of us have been using it
> Well, it seems that 2) is no longer true, so expect some
> development on that front.
> On Oct 28, 2007, at 2:18 PM, Benilton Carvalho wrote:
>> Affymetrix has the parsers on their SDK, which is used by affxparser.
>> It would be great if the PGF parsers were exposed on affxparser....
>> On Oct 28, 2007, at 5:11 PM, cstrato wrote:
>>> Dear Ben
>>> Reading your response I do not have an answer, but a question:
>>> Do you think it is worth sticking with unsupported CDF-files?
>>> Wouldn't it be better to move somehow to PGF-files just in
>>> case that in the future Affymetrix may no longer supply CDF-files?
>>> Using PGF-files would have the advantage, that people need
>>> no longer provide alternative CDF-files but only updated
>>> annotation files.
>>> I have no solution, but maybe the information from CDF and
>>> PGF files could be moved to SQLite, just as the annotation
>>> Best regards
>>> Bioc-devel at stat.math.ethz.ch mailing list
>> Bioc-devel at stat.math.ethz.ch mailing list
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