[Bioc-devel] Problem loading Rdbi (again)

[Herve Pages]

Hi Benno,


Benno Puetz wrote:
> After successfully installing and using Rdbi (1.12.0, on R 2.6.0) 
> yesterday, I started getting error messages when trying to load the 
> library today (... cyclic dependencies ...).

On my system 'library(Rdbi)' is desperately quiet ;-)

It's hard to believe that Rdbi has a circular dep problem since it depends
on nothing except R >= 1.2. What message do you get _exactly_? and after doing
what? Please show us the full session.

Also, we need your sessionInfo(). Here is mine:

> sessionInfo()
R version 2.6.0 (2007-10-03)
x86_64-unknown-linux-gnu

locale:
LC_CTYPE=en_US;LC_NUMERIC=C;LC_TIME=en_US;LC_COLLATE=en_US;LC_MONETARY=en_US;LC_MESSAGES=en_US;LC_PAPER=en_US;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US;LC_IDENTIFICATION=C

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base

other attached packages:
[1] Rdbi_1.12.0

loaded via a namespace (and not attached):
[1] rcompgen_0.1-17 tools_2.6.0


Cheers,
H.


> I am not aware of any change to the system that might have triggered this.
> 
> Checking the archives I found this problem mentioned quite some time 
> ago, but no explicit solution.
> Removing the library and freshly installing from Bioconductor did not 
> change anything. This is the only version of Rdbi found on my system.
> 
> Any suggestions towards a solution would be welcome
> 
>     Benno
> 
>