[Bioc-devel] Problem loading Rdbi (again)

Herve Pages hpages at fhcrc.org
Mon Nov 5 20:13:03 CET 2007

Hi Benno,

Benno Puetz wrote:
> After successfully installing and using Rdbi (1.12.0, on R 2.6.0) 
> yesterday, I started getting error messages when trying to load the 
> library today (... cyclic dependencies ...).

On my system 'library(Rdbi)' is desperately quiet ;-)

It's hard to believe that Rdbi has a circular dep problem since it depends
on nothing except R >= 1.2. What message do you get _exactly_? and after doing
what? Please show us the full session.

Also, we need your sessionInfo(). Here is mine:

> sessionInfo()
R version 2.6.0 (2007-10-03)


attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base

other attached packages:
[1] Rdbi_1.12.0

loaded via a namespace (and not attached):
[1] rcompgen_0.1-17 tools_2.6.0


> I am not aware of any change to the system that might have triggered this.
> Checking the archives I found this problem mentioned quite some time 
> ago, but no explicit solution.
> Removing the library and freshly installing from Bioconductor did not 
> change anything. This is the only version of Rdbi found on my system.
> Any suggestions towards a solution would be welcome
>     Benno

More information about the Bioc-devel mailing list