[Bioc-devel] hgu95aprobe missing sequences

[James W. MacDonald]

Hi Ernest,

The reason some of the probesets are not found in the probe package is 
because they are not available from Affy, and so are not in the probe 
data file that we use to build the probe package. This is because Affy 
got these sequences from TIGR, and evidently are not at liberty to 
release the sequences. Here is an example from Netaffx showing that they 
don't give out the sequence, but tell you to get it from TIGR:

https://www.affymetrix.com/analysis/netaffx/fullrecord.affx?pk=HG-U95AV2%3A1142_AT

Best,

Jim



Ernest Turro wrote:
> On 12 Jul 2007, at 14:52, Seth Falcon wrote:
>
>   
>> sessionInfo() please?
>>
>> --
>>     
>
>  > sessionInfo()
> R version 2.5.0 (2007-04-23)
> i386-apple-darwin8.9.1
>
> locale:
> C
>
> attached base packages:
> [1] "tools"     "stats"     "graphics"  "grDevices" "utils"      
> "datasets"
> [7] "methods"   "base"
>
> other attached packages:
>    hgu95acdf hgu95aprobe matchprobes        affy      affyio     Biobase
>     "1.16.0"    "1.16.2"     "1.8.1"    "1.14.1"     "1.4.0"     
> "1.14.0"
>
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>   



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