[Bioc-devel] BioC Release 2.0 REMINDER
Martin Maechler
maechler at stat.math.ethz.ch
Tue Apr 10 11:43:36 CEST 2007
>>>>> "Seth" == Seth Falcon <sfalcon at fhcrc.org>
>>>>> on Tue, 27 Mar 2007 13:41:44 -0700 writes:
Seth> Hello BioC package maintainers, R 2.5.0 is now alpha
Seth> and we encourage you to use it to test your packages
Seth> (you can download from a link on any CRAN mirror). We
Seth> will be updating our build system nodes to a recent R
Seth> 2.5.0 alpha in the next couple of days.
and I think this has "long" happened.
I wonder however, why
biocLite(.) or biocinstalll(.)
do only partially work for me.
I get
Running biocinstall version 2.0.3 with R version 2.5.0 (currently in alpha)
Your version of R requires version 2.0 of Bioconductor (currently in alpha too).
Will install the following packages:
[1] "affy" "affydata" "affyPLM" "annaffy" "annotate"
[6] "Biobase" "Biostrings" "DynDoc" "gcrma" "genefilter"
[11] "geneplotter" "hgu95av2" "limma" "marray" "matchprobes"
[16] "multtest" "ROC" "vsn" "xtable"
Please wait...
Warning: unable to access index for repository http://bioconductor.org/packages/2.0/bioc/src/contrib
Warning: unable to access index for repository http://bioconductor.org/packages/2.0/data/annotation/src/contrib
...............
and in the end nothing is installed.
Maybe you need to update the index file there,
or was I supposed not to use biocinstall() for alpha/beta
testing ?
Regards,
Martin
More information about the Bioc-devel
mailing list